Ruud Delwel Group

Molecular genetics of AML

Kép

Our Focus

Introduction: We study the mechanisms of defective gene regulation in acute myeloid leukemia (AML), with a specific focus on a unique subtype for which currently no cure is available. This subtype carries chromosomal abnormalities involving chr:3q26 causing overexpression of a gene called EVI1 (also designated MECOM). In “The New Yorker”, Tatiana Schlossberg, the granddaughter of JFK wrote a heartbreaking article about her fight against this currently incurable form of leukemia. She died on December 30th (https://archive.ph/eUmQV). Due to this  tragic story, 3q26 rearranged leukemia received worldwide attention. This story illustrates the severity of this type of cancer and that, even though progress has been made in cancer treatment in the past decennia, there are still subtypes of cancer that are incurable. In my group we decided to focus our research on understanding the biology of this subtype of leukemia and hope to find leads to cure this dreadful disease. 

 

Enhancer targeting: The overexpression of the EVI1 gene, which is located at chr:3q26, is caused by so called enhancer hijacking as the result of the chromosomal rearrangements. More than ten types of 3q26 rearrangements, hijacking the same numbers of enhancers from distinct “donor-genes” have been discovered that activate EVI1 expression in AML cells in various patients. The question that we address is: Can we inhibit EVI1 expression by interfering with the enhancer activity? We identified a number of compounds, among which drugs that specifically target so called CBP/p300 proteins. Those proteins are enzymes that bind to enhancers but their activity appears to be different when bound to distinct enhancers.  To our surprise were the effects of the p300/CBP inhibitors particularly strong and showed a certain level of selectivity for the hijacked enhancers. Consequently we demonstrated that  those drugs inhibit oncogene EVI1 expression and consequently interfere with leukaemia growth in vitro. An in vivo study, investigating the effects of those drugs on leukemic outgrowth, is currently being conducted. Together with the group of Bas van Steensel we are now planning experiments to understand why certain enhancers are hijacked so frequently, what they have in common at the nucleotide level and which protein complexes are predicted to be involved in this action. We anticipate on the discovery of more specific targets. 

 

Targeting EVI1 function: Another approach to interfere with oncogenes, is to target their function or activity. Therefore, targeting EVI1 protein in AMLs with aberrant expression may be another way to find cures for the disease. We found that EVI1 interacts with a nuclear protein called CTBP. This interaction was found to be essential for leukemic transformation. In fact we found an experimental approach to break EVI1/CTBP interaction and demonstrated inhibition of  tumor growth in a humanized mouse model. These findings hava been published in 2024 in  ScienceAdvances. We uncovered and published a month ago what the target gene is for EVI1/CTBP. The EVI1/CTBP repressor complex binds to regulatory elements of the gene for CEBPalpha (CEBPA). CEBPA is essential for the development of healthy neutrophils. When CEBPA is mutated, absent or repressed  neutrophils cannot be generated and the chances of leukemia development  are high. Our findings that CEBPA expression is blocked by EVI1/CTBP have been published in Blood in December 2025. In collaboration with Sebastian Pomplun, we are developing now small peptide-compounds to inhibit leukemic growth in patients with a chr.3q26 rearrangement. More importantly, this work, that we carried out with Oncode support has now been used to apply for external funds. I am proud to announce that this work is now in part funded by the World Wide Cancer Foundation.  

 

We have now developed more models to test the effects of compounds on either the expression of EVI1 or the function by EVI1 in leukemia.  

 

Finally, our program has now also affected another malignancy. We have found that  EVI1 overexpression due to genetic defects occurs with high frequency in Ovarian Cancer. A manuscript is now under review. 

About Ruud Delwel

My Research

Ruud Delwel started his career in 1983 in the lab of Bob Lowenberg, studying the in vitro behaviour of human acute myeloid leukemia cells in vitro. He obtained his PhD in 1990 (Cum Laude) and became a post doctoral fellow in the group of Dr. James Ihly, at the St. Jude’s Children’s Research Hospital in Memphis, Tennessee Leiden, and carried out retroviral insertional mutagenesis to discover novel disease genes in AML. He discovered the EVI1 gene to be one of the most severe disease genes in mouse leukemia’s and in human. When back in the Netherlands, ErasmusMC, he moved on studying the biological consequences of altered gene expression in human and murine AML.

His two major breakthrough studies are 1) The discovery that human AML can be classified based on unique gene expression signatures and on specific gene methylation profiles. These studies led to the uncover of a subset of unique AML cases with aberrant expression of the EVI1 gene. Further in depth analysis revealed a unique mechanism of enhancer deregulation in a subset of human EVI1-AMLs. Ruud Delwel and his team have been able to combine patient analysis with molecular studies using in vitro and in vivo modelling to improve our insight into molecular aspects of acute myeloid leukemia. These studies and the proposal that followed on these studies have been awarded by the Dutch Cancer Society or "Koningin Wilhelmina Fonds” with the "Koningin Wilhelmina Onderzoek prijs", or KWO Award.

Our research now focusses on the mechanisms of aberrant gene (EVI1) control by hijacked enhancers and how we may interfere with the aberrant expression of those genes. Applying sophisticated in vitro models we screened for compounds, using the drug repurposing library obtained by Oncode, to uncover ways to interfere with oncogene expression. We obtained several interesting hits, which are investigated further in the next five years within Oncode.

Awards
  • 2017: Jose Carreras Lecture/Price

  • 2015: KWO Award

  • 1994: Fellowship from the Royal Dutch Academy of Science (KNAW)

Key Publications
  1. Smeenk L, Ottema S, Mulet-Lazaro R, Ebert A, Havermans M, Varea AA, Fellner M, Pastoors D, van Herk S, Erpelinck-Verschueren C, Grob T, Hoogenboezem RM, Kavelaars FG, Matson DR, Bresnick EH, Bindels EM, Kentsis A, Zuber J, Ruud Delwel. Selective Requirement of MYB for Oncogenic Hyperactivation of a Translocated Enhancer in Leukemia. Cancer Discov. 2021 Nov;11(11):2868-2883.

  2. Ottema S, Mulet-Lazaro R, Erpelinck-Verschueren C, van Herk S, Havermans M, Arricibita Varea A, Vermeulen M, Beverloo HB, Gröschel S, Haferlach T, Haferlach C, J Wouters B, Bindels E, Smeenk L, Ruud Delwel. The leukemic oncogene EVI1 hijacks a MYC super-enhancer by CTCF-facilitated loops. Nat Commun. 2021 Sep 28;12(1):5679.

  3. Mulet-Lazaro R, van Herk S, Erpelinck C, Bindels E, Sanders MA, Vermeulen C, Renkens I, Valk P, Melnick AM, de Ridder J, Rehli M, Gebhard C, Ruud Delwel, Wouters BJ. Allele-specific expression of GATA2 due to epigenetic dysregulation in CEBPA double-mutant AML. Blood. 2021 Jul 15;138(2):160-177

  4. Sophie Ottema, Roger Mulet-Lazaro, H. Berna Beverloo, Claudia Erpelinc, Stanley van Herk, Marije Havermans, Tim Grob, Peter J. M. Valk, Eric Bindels, Torsten Haferlach, Claudia Haferlach, Leonie Smeenk, Ruud Delwel. Atypical 3q26/MECOM rearrangements genocopy inv(3)/t(3;3) in acute myeloid leukemia. Blood. 2020 Jul 9;136(2):224-234.

  5. Gröschel, S., Sanders, M.A., Hoogenboezem, R., De Wit, E., Bouwman, B.A.M., Erpelinck, C., ... & Ruud Delwel. (2014). An oncogenic enhancer-rearrangement causes concomitant deregulation of EVI1 and GATA2 in leukemia. 2014, Cell, 157(2), 369-81.

Members

Ruud Delwel
Group leader
Bas Wouters    
Senior Investigator
Claudia Erpelinck    
Technician
Dorien Pastoors    
PhD student
Emma Boertjes    
PhD student
Leonie Smeenk    
Postdoc fellow
Marije Havermans    
Technician
Stanley van Herk    
Technician
Shivani Rajhansa
PhD
Juliette Engelberts
PhD Student